1 Response_reg#1
4-112 aa · 109 aa · 48.7% of protein
Raw token
Response_reg:4:4.48e-26:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS08400
Response regulator OmpR family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS08400Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 224 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:146:1.98e-28:219:75:77- Raw architecture: Response_reg:4:4.48e-26:112:110:111#Trans_reg_C:146:1.98e-28:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000010.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17248-18928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_08400RefSeq proteinWP_117452978.1
Context group ID
GCF_003480975::NZ_QUJU01000010.1::G00002Context members
DW716_RS08400DW716_RS08405
Partner locus tags
DW716_RS08400DW716_RS08405
Partner old locus tags
DW716_08400DW716_08405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452978.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3G9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3G9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS08400Primary locus identifier stored in the genes table.
Old locus tagDW716_08400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000010.1Sequence record reported by the local genomic context database.
Genomic interval17 248-17 922 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 248-18 928 ntGCF_003480975::NZ_QUJU01000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000010.1All displayed genes belong to this local TCS context.
Neighborhood span17 248-18 928 nt1 681 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 248 nt18 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS08400GCF_003480975#DW716_RS08400
RROmpRCurrent focus
17 248-17 922 nt · Forward (+)
DW716_RS08405GCF_003480975#DW716_RS08405
HKClassic
17 912-18 928 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS04290Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543263
Simplified PFAM architecture for RROC_1543263
PFAM domain coverage: 184 / 224 aa (82.1%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-220]
- Domain count: 2
- Matched identifier: RROC_1543263
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-220 ; Trans_reg_C 146-220
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS04290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key