1 Response_reg#1
3-78 aa · 76 aa · 33.3% of protein
Raw token
Response_reg:3:0.000000000316:78:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS06275
Response regulator LytTR family
Absiella sp. AM27-20 · GCF_003480975
ClassRRTypeLytTRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480975#DW716_RS06275Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 228 aa (70.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-221 aa · 84 aa · 36.8% of protein
Raw token
LytTR:138:0.00000000192:221:89:98- Raw architecture: Response_reg:3:0.000000000316:78:77:111#LytTR:138:0.00000000192:221:89:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480975::NZ_QUJU01000007.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44062-44748Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_06275RefSeq proteinWP_117454023.1
Context group ID
GCF_003480975::NZ_QUJU01000007.1::G00053Context members
DW716_RS06275
Partner locus tags
DW716_RS06275
Partner old locus tags
DW716_06275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454023.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9RD83Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9RD83_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS06275Primary locus identifier stored in the genes table.
Old locus tagDW716_06275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000007.1Sequence record reported by the local genomic context database.
Genomic interval44 062-44 748 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 062-44 748 ntGCF_003480975::NZ_QUJU01000007.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000007.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000007.1All displayed genes belong to this local TCS context.
Neighborhood span44 062-44 748 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 062 nt44 748 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW716_RS06275GCF_003480975#DW716_RS06275
RRLytTRCurrent focus
44 062-44 748 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS00285Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314793
Simplified PFAM architecture for RROC_1314793
PFAM domain coverage: 182 / 228 aa (79.8%)
1 aa228 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-99] | LytTR[137-221]
- Domain count: 2
- Matched identifier: RROC_1314793
- Positioned domains: Response_reg 3-99 ; Response_reg 3-99 ; LytTR 137-221 ; LytTR 137-221
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS00285
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key