1 HisKA#1
451-517 aa · 67 aa · 6.9% of protein
Raw token
HisKA:451:8.02e-20:517:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS04860
Histidine kinase, Hybrid
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeHybridLength970 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480975#DW716_RS04860Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length970 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage405 / 970 aa (41.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa970 aa
Domain-by-domain annotation4 items
2 HATPase_c#2
564-678 aa · 115 aa · 11.9% of protein
Raw token
HATPase_c:564:4.13e-27:678:115:1093 Response_reg#3
699-810 aa · 112 aa · 11.5% of protein
Raw token
Response_reg:699:2.95e-22:810:112:1114 Response_reg#4
836-946 aa · 111 aa · 11.4% of protein
Raw token
Response_reg:836:1.25e-26:946:111:111- Raw architecture: HisKA:451:8.02e-20:517:67:64#HATPase_c:564:4.13e-27:678:115:109#Response_reg:699:2.95e-22:810:112:111#Response_reg:836:1.25e-26:946:111:111
- Domain description: 1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480975::NZ_QUJU01000005.1::G00050
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46426-50413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_04860RefSeq proteinWP_117454451.1
Context group ID
GCF_003480975::NZ_QUJU01000005.1::G00050Context members
DW716_RS04855DW716_RS04860
Partner locus tags
DW716_RS04855DW716_RS04860
Partner old locus tags
DW716_04855DW716_04860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454451.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R7N9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R7N9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS04860Primary locus identifier stored in the genes table.
Old locus tagDW716_04860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000005.1Sequence record reported by the local genomic context database.
Genomic interval47 501-50 413 nt2 913 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 426-50 413 ntGCF_003480975::NZ_QUJU01000005.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000005.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000005.1All displayed genes belong to this local TCS context.
Neighborhood span46 426-50 413 nt3 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 426 nt50 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW716_RS04855GCF_003480975#DW716_RS04855
RRRpfG
46 426-47 514 nt · Forward (+)
DW716_RS04860GCF_003480975#DW716_RS04860
HKHybridCurrent focus
47 501-50 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS11060Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0312185
Simplified PFAM architecture for HKOC_0312185
PFAM domain coverage: 414 / 970 aa (42.7%)
1 aa970 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[451-517] | HATPase_c[564-680] | Response_reg[699-812] | Response_reg[836-951]
- Domain count: 4
- Matched identifier: HKOC_0312185
- Positioned domains: HisKA 451-517 ; HATPase_c 564-680 ; Response_reg 699-812 ; Response_reg 836-951
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS11060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key