1 HisKA#1
139-202 aa · 64 aa · 16.6% of protein
Raw token
HisKA:139:0.0000871:202:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW716_RS02215
Histidine kinase, Classic
Absiella sp. AM27-20 · GCF_003480975
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003480975#DW716_RS02215Stable P2CS identifier used across views.
GenomeGCF_003480975Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 386 aa (44.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
251-358 aa · 108 aa · 28.0% of protein
Raw token
HATPase_c:251:0.000000000000745:358:112:109- Raw architecture: HisKA:139:0.0000871:202:64:64#HATPase_c:251:0.000000000000745:358:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003480975::NZ_QUJU01000002.1::G00026
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span163639-166578Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW716_02215RefSeq proteinWP_117452785.1
Context group ID
GCF_003480975::NZ_QUJU01000002.1::G00026Context members
DW716_RS02205DW716_RS02210DW716_RS02215
Partner locus tags
DW716_RS02205DW716_RS02210DW716_RS02215
Partner old locus tags
DW716_02205DW716_02210DW716_02215
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452785.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R5H1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R5H1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW716_RS02215Primary locus identifier stored in the genes table.
Old locus tagDW716_02215Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJU01000002.1Sequence record reported by the local genomic context database.
Genomic interval165 418-166 578 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 639-166 578 ntGCF_003480975::NZ_QUJU01000002.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480975::NZ_QUJU01000002.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span163 639-166 578 nt2 940 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 639 nt166 578 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DW716_RS02205GCF_003480975#DW716_RS02205
RROmpR
163 639-164 331 nt · Forward (+)
DW716_RS02210GCF_003480975#DW716_RS02210
HKClassic
164 321-165 421 nt · Forward (+)
DW716_RS02215GCF_003480975#DW716_RS02215
HKClassicCurrent focus
165 418-166 578 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433745#DW113_RS02045Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2559065
Simplified PFAM architecture for HKOC_2559065
PFAM domain coverage: 107 / 386 aa (27.7%)
1 aa386 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[252-358]
- Domain count: 1
- Matched identifier: HKOC_2559065
- Positioned domains: HATPase_c 252-358
Cluster members and taxonomy
Representative gene: GCF_003433745#DW113_RS02045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 277 · GCF_003480975
AssemblyASM348097v1 · Scaffoldhaploid
Genome composition4 739 334 bp · 35,5% GCAbsiella sp. AM27-20
Signal transduction countsGenes 99 · HK 43 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key