1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:2.31e-33:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS08625
Response regulator OmpR family
Blautia sp. AM29-29 · GCF_003480555
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS08625Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-222 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:147:1.34e-24:222:77:77- Raw architecture: Response_reg:5:2.31e-33:112:110:111#Trans_reg_C:147:1.34e-24:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000009.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span153451-155291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_08630RefSeq proteinWP_014080778.1
Context group ID
GCF_003480555::NZ_QUJD01000009.1::G00052Context members
DW769_RS08625DW769_RS08630
Partner locus tags
DW769_RS08625DW769_RS08630
Partner old locus tags
DW769_08630DW769_08635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014080778.1Primary protein accession used for annex mappings.
UniProt accessionG2T5C8Primary UniProt accession resolved in the annex database.
UniProt IDG2T5C8_ROSHADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS08625Primary locus identifier stored in the genes table.
Old locus tagDW769_08630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000009.1Sequence record reported by the local genomic context database.
Genomic interval153 451-154 125 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span153 451-155 291 ntGCF_003480555::NZ_QUJD01000009.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000009.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000009.1All displayed genes belong to this local TCS context.
Neighborhood span153 451-155 291 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
153 451 nt155 291 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS08625GCF_003480555#DW769_RS08625
RROmpRCurrent focus
153 451-154 125 nt · Forward (+)
DW769_RS08630GCF_003480555#DW769_RS08630
HKClassic
154 113-155 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156535#ROSINTL182_RS17390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529133
Simplified PFAM architecture for RROC_1529133
PFAM domain coverage: 182 / 224 aa (81.3%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1529133
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000156535#ROSINTL182_RS17390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key