1 HAMP#1
186-254 aa · 69 aa · 13.9% of protein
Raw token
HAMP:186:0.000000000000104:254:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS07315
Histidine kinase, Classic
Blautia sp. AM29-29 · GCF_003480555
ClassHKTypeClassicLength497 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS07315Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length497 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 497 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa497 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-332 aa · 68 aa · 13.7% of protein
Raw token
HisKA:265:0.0000000000000016:332:68:643 HATPase_c#3
379-492 aa · 114 aa · 22.9% of protein
Raw token
HATPase_c:379:3.26e-32:492:114:109- Raw architecture: HAMP:186:0.000000000000104:254:69:69#HisKA:265:0.0000000000000016:332:68:64#HATPase_c:379:3.26e-32:492:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000008.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35437-37616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_07320RefSeq proteinWP_118750216.1
Context group ID
GCF_003480555::NZ_QUJD01000008.1::G00047Context members
DW769_RS07315DW769_RS07320
Partner locus tags
DW769_RS07315DW769_RS07320
Partner old locus tags
DW769_07320DW769_07325
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118750216.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS07315Primary locus identifier stored in the genes table.
Old locus tagDW769_07320Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000008.1Sequence record reported by the local genomic context database.
Genomic interval35 437-36 930 nt1 494 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 437-37 616 ntGCF_003480555::NZ_QUJD01000008.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000008.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span35 437-37 616 nt2 180 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 437 nt37 616 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS07315GCF_003480555#DW769_RS07315
HKClassicCurrent focus
35 437-36 930 nt · Forward (+)
DW769_RS07320GCF_003480555#DW769_RS07320
RROmpR
36 927-37 616 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS07315The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1494234
Simplified PFAM architecture for HKOC_1494234
PFAM domain coverage: 229 / 497 aa (46.1%)
1 aa497 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[202-254] | HisKA[267-331] | HATPase_c[380-490]
- Domain count: 3
- Matched identifier: HKOC_1494234
- Positioned domains: HAMP 202-254 ; HisKA 267-331 ; HATPase_c 380-490
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS07315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key