1 HAMP#1
279-349 aa · 71 aa · 12.0% of protein
Raw token
HAMP:279:0.000000642:349:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS07215
Histidine kinase, Classic
Blautia sp. AM29-29 · GCF_003480555
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS07215Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 590 aa (38.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation3 items
2 His_kinase#2
364-437 aa · 74 aa · 12.5% of protein
Raw token
His_kinase:364:1.85e-19:437:74:803 HATPase_c#3
466-545 aa · 80 aa · 13.6% of protein
Raw token
HATPase_c:466:0.000000603:545:84:109- Raw architecture: HAMP:279:0.000000642:349:71:69#His_kinase:364:1.85e-19:437:74:80#HATPase_c:466:0.000000603:545:84:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000008.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6790-10158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_07220RefSeq proteinWP_199688477.1
Context group ID
GCF_003480555::NZ_QUJD01000008.1::G00046Context members
DW769_RS07210DW769_RS07215
Partner locus tags
DW769_RS07210DW769_RS07215
Partner old locus tags
DW769_07215DW769_07220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199688477.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS07215Primary locus identifier stored in the genes table.
Old locus tagDW769_07220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000008.1Sequence record reported by the local genomic context database.
Genomic interval8 386-10 158 nt1 773 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 790-10 158 ntGCF_003480555::NZ_QUJD01000008.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000008.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span6 790-10 158 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 790 nt10 158 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS07210GCF_003480555#DW769_RS07210
RRunclassified
6 790-8 367 nt · Reverse (-)
DW769_RS07215GCF_003480555#DW769_RS07215
HKClassicCurrent focus
8 386-10 158 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS07215The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1111252
Simplified PFAM architecture for HKOC_1111252
PFAM domain coverage: 161 / 590 aa (27.3%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-441] | HATPase_c[462-545]
- Domain count: 2
- Matched identifier: HKOC_1111252
- Positioned domains: His_kinase 365-441 ; HATPase_c 462-545
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS07215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key