1 Response_reg#1
4-116 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:4:6.41e-25:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS05700
Response regulator, unclassified
Blautia sp. AM29-29 · GCF_003480555
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS05700Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 531 aa (28.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
488-526 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:488:0.0000947:526:39:42- Raw architecture: Response_reg:4:6.41e-25:116:113:111#HTH_AraC:488:0.0000947:526:39:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000006.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53213-56528Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_05700RefSeq proteinWP_118750090.1
Context group ID
GCF_003480555::NZ_QUJD01000006.1::G00042Context members
DW769_RS05700DW769_RS05705
Partner locus tags
DW769_RS05700DW769_RS05705
Partner old locus tags
DW769_05700DW769_05705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118750090.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS05700Primary locus identifier stored in the genes table.
Old locus tagDW769_05700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000006.1Sequence record reported by the local genomic context database.
Genomic interval53 213-54 808 nt1 596 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 213-56 528 ntGCF_003480555::NZ_QUJD01000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000006.1All displayed genes belong to this local TCS context.
Neighborhood span53 213-56 528 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 213 nt56 528 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS05700GCF_003480555#DW769_RS05700
RRunclassifiedCurrent focus
53 213-54 808 nt · Reverse (-)
DW769_RS05705GCF_003480555#DW769_RS05705
HKClassic
54 786-56 528 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480555#DW769_RS05700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110054
Simplified PFAM architecture for RROC_0110054
PFAM domain coverage: 187 / 531 aa (35.2%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[453-526]
- Domain count: 2
- Matched identifier: RROC_0110054
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 453-526 ; HTH_18 453-526
Cluster members and taxonomy
Representative gene: GCF_003480555#DW769_RS05700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key