1 HAMP#1
285-353 aa · 69 aa · 12.0% of protein
Raw token
HAMP:285:0.00000000794:353:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW769_RS02515
Histidine kinase, Classic
Blautia sp. AM29-29 · GCF_003480555
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480555#DW769_RS02515Stable P2CS identifier used across views.
GenomeGCF_003480555Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage254 / 576 aa (44.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-449 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:372:2.13e-25:449:78:803 HATPase_c#3
466-572 aa · 107 aa · 18.6% of protein
Raw token
HATPase_c:466:0.00000000607:572:113:109- Raw architecture: HAMP:285:0.00000000794:353:69:69#His_kinase:372:2.13e-25:449:78:80#HATPase_c:466:0.00000000607:572:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480555::NZ_QUJD01000002.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span174376-177686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW769_02515RefSeq proteinWP_117509691.1
Context group ID
GCF_003480555::NZ_QUJD01000002.1::G00021Context members
DW769_RS02510DW769_RS02515
Partner locus tags
DW769_RS02510DW769_RS02515
Partner old locus tags
DW769_02510DW769_02515
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117509691.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW769_RS02515Primary locus identifier stored in the genes table.
Old locus tagDW769_02515Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUJD01000002.1Sequence record reported by the local genomic context database.
Genomic interval175 956-177 686 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span174 376-177 686 ntGCF_003480555::NZ_QUJD01000002.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480555::NZ_QUJD01000002.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUJD01000002.1All displayed genes belong to this local TCS context.
Neighborhood span174 376-177 686 nt3 311 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
174 376 nt177 686 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW769_RS02510GCF_003480555#DW769_RS02510
RRunclassified
174 376-175 959 nt · Reverse (-)
DW769_RS02515GCF_003480555#DW769_RS02515
HKClassicCurrent focus
175 956-177 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS06845Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184225
Simplified PFAM architecture for HKOC_1184225
PFAM domain coverage: 226 / 576 aa (39.2%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-353] | His_kinase[372-447] | HATPase_c[468-569]
- Domain count: 3
- Matched identifier: HKOC_1184225
- Positioned domains: HAMP 306-353 ; His_kinase 372-447 ; HATPase_c 468-569
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS06845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 975 · GCF_003480555
AssemblyASM348055v1 · Scaffoldhaploid
Genome composition3 523 408 bp · 47,5% GCBlautia sp. AM29-29
Signal transduction countsGenes 87 · HK 47 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key