1 HisKA#1
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000647:150:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS07235
Histidine kinase, Classic
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS07235Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 305 aa (55.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
202-304 aa · 103 aa · 33.8% of protein
Raw token
HATPase_c:202:6.58e-30:304:103:109- Raw architecture: HisKA:85:0.0000000647:150:66:64#HATPase_c:202:6.58e-30:304:103:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000006.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91929-93544Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_07235RefSeq proteinWP_118729539.1
Context group ID
GCF_003480365::NZ_QUIX01000006.1::G00038Context members
DW806_RS07230DW806_RS07235
Partner locus tags
DW806_RS07230DW806_RS07235
Partner old locus tags
DW806_07230DW806_07235
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729539.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS07235Primary locus identifier stored in the genes table.
Old locus tagDW806_07235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000006.1Sequence record reported by the local genomic context database.
Genomic interval92 627-93 544 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 929-93 544 ntGCF_003480365::NZ_QUIX01000006.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000006.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000006.1All displayed genes belong to this local TCS context.
Neighborhood span91 929-93 544 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 929 nt93 544 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS07230GCF_003480365#DW806_RS07230
RROmpR
91 929-92 621 nt · Forward (+)
DW806_RS07235GCF_003480365#DW806_RS07235
HKClassicCurrent focus
92 627-93 544 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS07235The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882365
Simplified PFAM architecture for HKOC_2882365
PFAM domain coverage: 170 / 305 aa (55.7%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[199-304]
- Domain count: 2
- Matched identifier: HKOC_2882365
- Positioned domains: HisKA 85-148 ; HATPase_c 199-304
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS07235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key