1 Response_reg#1
4-116 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:4:6.7e-32:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS03995
Response regulator, unclassified
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassRRTypeunclassifiedLength519 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS03995Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length519 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 519 aa (36.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa519 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-464 aa · 43 aa · 8.3% of protein
Raw token
HTH_AraC:422:0.000000000167:464:43:423 HTH_AraC#3
479-513 aa · 35 aa · 6.7% of protein
Raw token
HTH_AraC:479:0.0000000146:513:35:42- Raw architecture: Response_reg:4:6.7e-32:116:113:111#HTH_AraC:422:0.000000000167:464:43:42#HTH_AraC:479:0.0000000146:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36862-39854Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_03995RefSeq proteinWP_118729173.1
Context group ID
GCF_003480365::NZ_QUIX01000003.1::G00030Context members
DW806_RS03995DW806_RS04000
Partner locus tags
DW806_RS03995DW806_RS04000
Partner old locus tags
DW806_03995DW806_04000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729173.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS03995Primary locus identifier stored in the genes table.
Old locus tagDW806_03995Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000003.1Sequence record reported by the local genomic context database.
Genomic interval36 862-38 421 nt1 560 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span36 862-39 854 ntGCF_003480365::NZ_QUIX01000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000003.1All displayed genes belong to this local TCS context.
Neighborhood span36 862-39 854 nt2 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 862 nt39 854 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS03995GCF_003480365#DW806_RS03995
RRunclassifiedCurrent focus
36 862-38 421 nt · Reverse (-)
DW806_RS04000GCF_003480365#DW806_RS04000
HKClassic
38 418-39 854 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03995The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0127737
Simplified PFAM architecture for RROC_0127737
PFAM domain coverage: 312 / 519 aa (60.1%)
1 aa519 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[160-280] | HTH_18[437-515]
- Domain count: 3
- Matched identifier: RROC_0127737
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GGDEF_2 160-280 ; GGDEF_2 160-280 ; HTH_18 437-515 ; HTH_18 437-515
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key