1 HAMP#1
278-349 aa · 72 aa · 12.5% of protein
Raw token
HAMP:278:0.0000000704:349:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS03860
Histidine kinase, Classic
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassHKTypeClassicLength575 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS03860Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length575 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 575 aa (41.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa575 aa
Domain-by-domain annotation3 items
2 HisKA#2
360-423 aa · 64 aa · 11.1% of protein
Raw token
HisKA:360:6.2e-17:423:64:643 HATPase_c#3
468-571 aa · 104 aa · 18.1% of protein
Raw token
HATPase_c:468:7.85e-22:571:106:109- Raw architecture: HAMP:278:0.0000000704:349:72:69#HisKA:360:6.2e-17:423:64:64#HATPase_c:468:7.85e-22:571:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5875-8276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_03860RefSeq proteinWP_118729159.1
Context group ID
GCF_003480365::NZ_QUIX01000003.1::G00029Context members
DW806_RS03860DW806_RS03865
Partner locus tags
DW806_RS03860DW806_RS03865
Partner old locus tags
DW806_03860DW806_03865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729159.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS03860Primary locus identifier stored in the genes table.
Old locus tagDW806_03860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000003.1Sequence record reported by the local genomic context database.
Genomic interval5 875-7 602 nt1 728 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span5 875-8 276 ntGCF_003480365::NZ_QUIX01000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000003.1All displayed genes belong to this local TCS context.
Neighborhood span5 875-8 276 nt2 402 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 875 nt8 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS03860GCF_003480365#DW806_RS03860
HKClassicCurrent focus
5 875-7 602 nt · Reverse (-)
DW806_RS03865GCF_003480365#DW806_RS03865
RROmpR
7 599-8 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03860The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1189230
Simplified PFAM architecture for HKOC_1189230
PFAM domain coverage: 167 / 575 aa (29.0%)
1 aa575 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[361-423] | HATPase_c[468-571]
- Domain count: 2
- Matched identifier: HKOC_1189230
- Positioned domains: HisKA 361-423 ; HATPase_c 468-571
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key