1 Response_reg#1
4-115 aa · 112 aa · 58.9% of protein
Raw token
Response_reg:4:0.00000843:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS03445
Response regulator, AmiR_NasR family
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassRRTypeAmiR_NasRLength190 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480365#DW806_RS03445Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length190 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 190 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa190 aa
Domain-by-domain annotation2 items
2 ANTAR#2
137-185 aa · 49 aa · 25.8% of protein
Raw token
ANTAR:137:0.0000000000000276:185:49:49- Raw architecture: Response_reg:4:0.00000843:115:113:111#ANTAR:137:0.0000000000000276:185:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480365::NZ_QUIX01000002.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span311195-311767Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_03445RefSeq proteinWP_118729102.1
Context group ID
GCF_003480365::NZ_QUIX01000002.1::G00022Context members
DW806_RS03445
Partner locus tags
DW806_RS03445
Partner old locus tags
DW806_03445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729102.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS03445Primary locus identifier stored in the genes table.
Old locus tagDW806_03445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000002.1Sequence record reported by the local genomic context database.
Genomic interval311 195-311 767 nt573 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span311 195-311 767 ntGCF_003480365::NZ_QUIX01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span311 195-311 767 nt573 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
311 195 nt311 767 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW806_RS03445GCF_003480365#DW806_RS03445
RRAmiR_NasRCurrent focus
311 195-311 767 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03445The current gene is the representative for this cluster.
PFAM architectureANTAR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2170766
Simplified PFAM architecture for RROC_2170766
PFAM domain coverage: 53 / 190 aa (27.9%)
1 aa190 aa
ANTAR
- Simplified architecture: ANTAR
- Raw architecture: ANTAR[133-185]
- Domain count: 1
- Matched identifier: RROC_2170766
- Positioned domains: ANTAR 133-185 ; ANTAR 133-185
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key