1 Response_reg#1
3-117 aa · 115 aa · 23.8% of protein
Raw token
Response_reg:3:1.71e-29:117:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS02785
Response regulator, unclassified
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassRRTypeunclassifiedLength484 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS02785Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length484 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 484 aa (39.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa484 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
388-428 aa · 41 aa · 8.5% of protein
Raw token
HTH_AraC:388:0.0000000348:428:41:423 HTH_AraC#3
443-479 aa · 37 aa · 7.6% of protein
Raw token
HTH_AraC:443:0.00000432:479:37:42- Raw architecture: Response_reg:3:1.71e-29:117:115:111#HTH_AraC:388:0.0000000348:428:41:42#HTH_AraC:443:0.00000432:479:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000002.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span161379-164601Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_02785RefSeq proteinWP_118729026.1
Context group ID
GCF_003480365::NZ_QUIX01000002.1::G00019Context members
DW806_RS02785DW806_RS02790
Partner locus tags
DW806_RS02785DW806_RS02790
Partner old locus tags
DW806_02785DW806_02790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729026.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS02785Primary locus identifier stored in the genes table.
Old locus tagDW806_02785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000002.1Sequence record reported by the local genomic context database.
Genomic interval161 379-162 833 nt1 455 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span161 379-164 601 ntGCF_003480365::NZ_QUIX01000002.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000002.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span161 379-164 601 nt3 223 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
161 379 nt164 601 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS02785GCF_003480365#DW806_RS02785
RRunclassifiedCurrent focus
161 379-162 833 nt · Reverse (-)
DW806_RS02790GCF_003480365#DW806_RS02790
HKClassic
162 814-164 601 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS02785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0175735
Simplified PFAM architecture for RROC_0175735
PFAM domain coverage: 190 / 484 aa (39.3%)
1 aa484 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[402-479]
- Domain count: 2
- Matched identifier: RROC_0175735
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 402-479 ; HTH_18 402-479
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS02785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key