Gene detail

DW915_RS09115

Response regulator, RpfG family

Blautia sp. AM42-2 · GCF_003480245

Open genome Open selected cluster RefSeq

ClassRRTypeRpfGLength688 aaTM0ValidatedNoCompleteYesContextorphan

Gene IDGCF_003480245#DW915_RS09115Stable P2CS identifier used across views.

GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia

Selected clusterRROC_0032484Run 7 · 1 sequences · id 100% · cov 80% · representative

External referencesWP_243033812.1 · MIST4 DW915_RS09115RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

GGDEFResponse_regHD

Protein length688 aaLength used to scale native and Biotite-like views.

Annotated domains33 with usable coordinates.

Domain coverage359 / 688 aa (52.2%)Merged over positioned domains only.

Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa688 aa

Domain-by-domain annotation3 items

1 GGDEF#1

149-294 aa · 146 aa · 21.2% of protein

Raw tokenGGDEF:149:1.05e-34:294:158:160

2 Response_reg#2

321-434 aa · 114 aa · 16.6% of protein

Raw tokenResponse_reg:321:4.45e-26:434:115:111

3 HD#3

516-614 aa · 99 aa · 14.4% of protein

Raw tokenHD:516:0.000000000000464:614:99:110

Raw architecture: GGDEF:149:1.05e-34:294:158:160#Response_reg:321:4.45e-26:434:115:111#HD:516:0.000000000000464:614:99:110
Domain description: 1 GGDEF,1 Response_reg,1 HD
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelorphanGCF_003480245::NZ_QUIM01000006.1::G00046

Group size11 locus tag listed below.

HK / RR0 / 1Counts resolved for the local TCS neighborhood.

Context span167598-169664Genomic interval covered by the local TCS group.

Identifiers

Old locus tagDW915_09110RefSeq proteinWP_243033812.1

Context group IDGCF_003480245::NZ_QUIM01000006.1::G00046

Context members

DW915_RS09115

Partner locus tags

DW915_RS09115

Partner old locus tags

DW915_09110

Partner protein IDs

WP_243033812.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_243033812.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagDW915_RS09115Primary locus identifier stored in the genes table.

Old locus tagDW915_09110Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_QUIM01000006.1Sequence record reported by the local genomic context database.

Genomic interval167 598-169 664 nt2 067 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span167 598-169 664 ntGCF_003480245::NZ_QUIM01000006.1::G00046

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_003480245::NZ_QUIM01000006.1::G00046

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelorphanNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_QUIM01000006.1All displayed genes belong to this local TCS context.

Neighborhood span167 598-169 664 nt2 067 nt

Members11 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

167 598 nt169 664 nt

+-DW915_RS09115

Neighborhood gene cards

1 gene in the current local neighborhood.

DW915_RS09115GCF_003480245#DW915_RS09115

RRRpfGCurrent focus

167 598-169 664 nt · Forward (+)

Old locus DW915_09110RefSeq WP_243033812.1

Open current gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

RROC_0032484RR

Run 71 sequencesid 100%cov 80%

PFAM GGDEF + Response_reg + HD_5

Current gene is the representative sequence.

Selected clusterRROC_0032484Run 7 · RR · 1 sequences

Representative sequenceGCF_003480245#DW915_RS09115The current gene is the representative for this cluster.

PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for RROC_0032484

Simplified PFAM architecture for RROC_0032484

PFAM domain coverage: 388 / 688 aa (56.4%)

1 aa688 aa

GGDEFResponse_regHD_5

Simplified architecture: GGDEF + Response_reg + HD_5
Raw architecture: GGDEF[149-293] | Response_reg[321-433] | HD_5[504-633]
Domain count: 3
Matched identifier: RROC_0032484
Positioned domains: GGDEF 149-293 ; GGDEF 149-293 ; Response_reg 321-433 ; Response_reg 321-433 ; HD_5 504-633 ; HD_5 504-633

Cluster members and taxonomy

Representative gene: GCF_003480245#DW915_RS09115

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245

AssemblyASM348024v1 · Scaffoldhaploid

Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2

Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia

Open genome Search genes in genome Search RR genes NCBI assembly files

Related genes

Preview from the same derived genome key