1 PAS_3#1
207-291 aa · 85 aa · 12.3% of protein
Raw token
PAS_3:207:4.81e-16:291:86:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW915_RS06240
Histidine kinase, Hybrid
Blautia sp. AM42-2 · GCF_003480245
ClassHKTypeHybridLength690 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480245#DW915_RS06240Stable P2CS identifier used across views.
GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length690 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage382 / 690 aa (55.4%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa690 aa
Domain-by-domain annotation4 items
2 HisKA#2
316-382 aa · 67 aa · 9.7% of protein
Raw token
HisKA:316:3.64e-16:382:67:643 HATPase_c#3
431-547 aa · 117 aa · 17.0% of protein
Raw token
HATPase_c:431:6.48e-28:547:117:1094 Response_reg#4
570-682 aa · 113 aa · 16.4% of protein
Raw token
Response_reg:570:1.08e-27:682:113:111- Raw architecture: PAS_3:207:4.81e-16:291:86:89#HisKA:316:3.64e-16:382:67:64#HATPase_c:431:6.48e-28:547:117:109#Response_reg:570:1.08e-27:682:113:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480245::NZ_QUIM01000003.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span199826-201898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW915_06240RefSeq proteinWP_118741791.1
Context group ID
GCF_003480245::NZ_QUIM01000003.1::G00031Context members
DW915_RS06240
Partner locus tags
DW915_RS06240
Partner old locus tags
DW915_06240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118741791.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW915_RS06240Primary locus identifier stored in the genes table.
Old locus tagDW915_06240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIM01000003.1Sequence record reported by the local genomic context database.
Genomic interval199 826-201 898 nt2 073 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span199 826-201 898 ntGCF_003480245::NZ_QUIM01000003.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480245::NZ_QUIM01000003.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span199 826-201 898 nt2 073 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
199 826 nt201 898 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW915_RS06240GCF_003480245#DW915_RS06240
HKHybridCurrent focus
199 826-201 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS06240The current gene is the representative for this cluster.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0791702
Simplified PFAM architecture for HKOC_0791702
PFAM domain coverage: 382 / 690 aa (55.4%)
1 aa690 aa
PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[207-291] | HisKA[316-382] | HATPase_c[432-547] | Response_reg[570-683]
- Domain count: 4
- Matched identifier: HKOC_0791702
- Positioned domains: PAS_3 207-291 ; HisKA 316-382 ; HATPase_c 432-547 ; Response_reg 570-683
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS06240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245
AssemblyASM348024v1 · Scaffoldhaploid
Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key