1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:1.79e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW915_RS05520
Response regulator OmpR family
Blautia sp. AM42-2 · GCF_003480245
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480245#DW915_RS05520Stable P2CS identifier used across views.
GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:155:1.38e-33:231:77:77- Raw architecture: Response_reg:6:1.79e-38:115:111:111#Trans_reg_C:155:1.38e-33:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480245::NZ_QUIM01000003.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50216-52655Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW915_05520RefSeq proteinWP_118741739.1
Context group ID
GCF_003480245::NZ_QUIM01000003.1::G00030Context members
DW915_RS05520DW915_RS05525
Partner locus tags
DW915_RS05520DW915_RS05525
Partner old locus tags
DW915_05520DW915_05525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118741739.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW915_RS05520Primary locus identifier stored in the genes table.
Old locus tagDW915_05520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIM01000003.1Sequence record reported by the local genomic context database.
Genomic interval50 216-50 929 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 216-52 655 ntGCF_003480245::NZ_QUIM01000003.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480245::NZ_QUIM01000003.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span50 216-52 655 nt2 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 216 nt52 655 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW915_RS05520GCF_003480245#DW915_RS05520
RROmpRCurrent focus
50 216-50 929 nt · Forward (+)
DW915_RS05525GCF_003480245#DW915_RS05525
HKClassic
50 895-52 655 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS05520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968617
Simplified PFAM architecture for RROC_0968617
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0968617
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS05520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245
AssemblyASM348024v1 · Scaffoldhaploid
Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key