1 HAMP#1
277-349 aa · 73 aa · 12.6% of protein
Raw token
HAMP:277:0.000024:349:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW915_RS05455
Histidine kinase, Classic
Blautia sp. AM42-2 · GCF_003480245
ClassHKTypeClassicLength580 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480245#DW915_RS05455Stable P2CS identifier used across views.
GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length580 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage258 / 580 aa (44.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa580 aa
Domain-by-domain annotation3 items
2 His_kinase#2
365-443 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:365:8.04e-21:443:79:803 HATPase_c#3
461-566 aa · 106 aa · 18.3% of protein
Raw token
HATPase_c:461:0.0000000233:566:113:109- Raw architecture: HAMP:277:0.000024:349:73:69#His_kinase:365:8.04e-21:443:79:80#HATPase_c:461:0.0000000233:566:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480245::NZ_QUIM01000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30114-33429Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW915_05455RefSeq proteinWP_117804673.1
Context group ID
GCF_003480245::NZ_QUIM01000003.1::G00029Context members
DW915_RS05455DW915_RS05460
Partner locus tags
DW915_RS05455DW915_RS05460
Partner old locus tags
DW915_05455DW915_05460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117804673.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW915_RS05455Primary locus identifier stored in the genes table.
Old locus tagDW915_05455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIM01000003.1Sequence record reported by the local genomic context database.
Genomic interval30 114-31 856 nt1 743 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 114-33 429 ntGCF_003480245::NZ_QUIM01000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480245::NZ_QUIM01000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIM01000003.1All displayed genes belong to this local TCS context.
Neighborhood span30 114-33 429 nt3 316 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 114 nt33 429 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW915_RS05455GCF_003480245#DW915_RS05455
HKClassicCurrent focus
30 114-31 856 nt · Forward (+)
DW915_RS05460GCF_003480245#DW915_RS05460
RRunclassified
31 834-33 429 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003460565#DWZ44_RS08640Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1163145
Simplified PFAM architecture for HKOC_1163145
PFAM domain coverage: 186 / 580 aa (32.1%)
1 aa580 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-443] | HATPase_c[462-568]
- Domain count: 2
- Matched identifier: HKOC_1163145
- Positioned domains: His_kinase 365-443 ; HATPase_c 462-568
Cluster members and taxonomy
Representative gene: GCF_003460565#DWZ44_RS08640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245
AssemblyASM348024v1 · Scaffoldhaploid
Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key