1 Response_reg#1
46-104 aa · 59 aa · 50.0% of protein
Raw token
Response_reg:46:0.00000000233:104:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW915_RS04485
Response regulator, CheY family
Blautia sp. AM42-2 · GCF_003480245
ClassRRTypeCheYLength118 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003480245#DW915_RS04485Stable P2CS identifier used across views.
GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length118 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage59 / 118 aa (50.0%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa118 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:46:0.00000000233:104:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003480245::NZ_QUIM01000002.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span297661-298017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW915_04485RefSeq proteinWP_118741662.1
Context group ID
GCF_003480245::NZ_QUIM01000002.1::G00025Context members
DW915_RS04485
Partner locus tags
DW915_RS04485
Partner old locus tags
DW915_04485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118741662.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW915_RS04485Primary locus identifier stored in the genes table.
Old locus tagDW915_04485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIM01000002.1Sequence record reported by the local genomic context database.
Genomic interval297 661-298 017 nt357 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span297 661-298 017 ntGCF_003480245::NZ_QUIM01000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480245::NZ_QUIM01000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIM01000002.1All displayed genes belong to this local TCS context.
Neighborhood span297 661-298 017 nt357 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
297 661 nt298 017 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW915_RS04485GCF_003480245#DW915_RS04485
RRCheYCurrent focus
297 661-298 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS04485The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2457269
Simplified PFAM architecture for RROC_2457269
PFAM domain coverage: 59 / 118 aa (50.0%)
1 aa118 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[46-104]
- Domain count: 1
- Matched identifier: RROC_2457269
- Positioned domains: Response_reg 46-104 ; Response_reg 46-104
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS04485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245
AssemblyASM348024v1 · Scaffoldhaploid
Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key