1 Response_reg#1
6-115 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:6:6.5e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW915_RS03055
Response regulator OmpR family
Blautia sp. AM42-2 · GCF_003480245
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480245#DW915_RS03055Stable P2CS identifier used across views.
GenomeGCF_003480245Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 232 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 33.2% of protein
Raw token
Trans_reg_C:154:2.32e-32:230:77:77- Raw architecture: Response_reg:6:6.5e-38:115:111:111#Trans_reg_C:154:2.32e-32:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480245::NZ_QUIM01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span651585-653406Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW915_03055RefSeq proteinWP_022462401.1
Context group ID
GCF_003480245::NZ_QUIM01000001.1::G00004Context members
DW915_RS03050DW915_RS03055
Partner locus tags
DW915_RS03050DW915_RS03055
Partner old locus tags
DW915_03050DW915_03055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462401.1Primary protein accession used for annex mappings.
UniProt accessionA0A174K1V2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174K1V2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW915_RS03055Primary locus identifier stored in the genes table.
Old locus tagDW915_03055Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIM01000001.1Sequence record reported by the local genomic context database.
Genomic interval652 708-653 406 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span651 585-653 406 ntGCF_003480245::NZ_QUIM01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480245::NZ_QUIM01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIM01000001.1All displayed genes belong to this local TCS context.
Neighborhood span651 585-653 406 nt1 822 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
651 585 nt653 406 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW915_RS03050GCF_003480245#DW915_RS03050
HKClassic
651 585-652 718 nt · Reverse (-)
DW915_RS03055GCF_003480245#DW915_RS03055
RROmpRCurrent focus
652 708-653 406 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405555#ARB84_RS15135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1124243
Simplified PFAM architecture for RROC_1124243
PFAM domain coverage: 186 / 232 aa (80.2%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1124243
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_001405555#ARB84_RS15135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 976 · GCF_003480245
AssemblyASM348024v1 · Scaffoldhaploid
Genome composition3 374 269 bp · 47,5% GCBlautia sp. AM42-2
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key