1 HAMP#1
288-357 aa · 70 aa · 12.2% of protein
Raw token
HAMP:288:0.000000000000195:357:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWX26_RS07485
Histidine kinase, Classic
Blautia sp. AF19-1 · GCF_003479155
ClassHKTypeClassicLength576 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003479155#DWX26_RS07485Stable P2CS identifier used across views.
GenomeGCF_003479155Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 576 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation3 items
2 His_kinase#2
373-445 aa · 73 aa · 12.7% of protein
Raw token
His_kinase:373:4.02e-29:445:73:803 HATPase_c#3
463-568 aa · 106 aa · 18.4% of protein
Raw token
HATPase_c:463:0.00000000000000782:568:115:109- Raw architecture: HAMP:288:0.000000000000195:357:70:69#His_kinase:373:4.02e-29:445:73:80#HATPase_c:463:0.00000000000000782:568:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003479155::NZ_QUGQ01000008.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154230-157485Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWX26_07480RefSeq proteinWP_158568552.1
Context group ID
GCF_003479155::NZ_QUGQ01000008.1::G00056Context members
DWX26_RS07485DWX26_RS17375
Partner locus tags
DWX26_RS07485DWX26_RS17375
Partner old locus tags
DWX26_07480DWX26_07485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158568552.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWX26_RS07485Primary locus identifier stored in the genes table.
Old locus tagDWX26_07480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUGQ01000008.1Sequence record reported by the local genomic context database.
Genomic interval154 230-155 960 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 230-157 485 ntGCF_003479155::NZ_QUGQ01000008.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003479155::NZ_QUGQ01000008.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUGQ01000008.1All displayed genes belong to this local TCS context.
Neighborhood span154 230-157 485 nt3 256 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 230 nt157 485 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWX26_RS07485GCF_003479155#DWX26_RS07485
HKClassicCurrent focus
154 230-155 960 nt · Reverse (-)
DWX26_RS17375GCF_003479155#DWX26_RS17375
RRunclassified
155 962-157 485 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003462165#DW746_RS08080Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1184244
Simplified PFAM architecture for HKOC_1184244
PFAM domain coverage: 230 / 576 aa (39.9%)
1 aa576 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[307-357] | His_kinase[373-445] | HATPase_c[463-568]
- Domain count: 3
- Matched identifier: HKOC_1184244
- Positioned domains: HAMP 307-357 ; His_kinase 373-445 ; HATPase_c 463-568
Cluster members and taxonomy
Representative gene: GCF_003462165#DW746_RS08080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 960 · GCF_003479155
AssemblyASM347915v1 · Scaffoldhaploid
Genome composition3 558 929 bp · 47,5% GCBlautia sp. AF19-1
Signal transduction countsGenes 98 · HK 49 · RR 46CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key