1 dCache_1#1
37-253 aa · 217 aa · 38.3% of protein
Raw token
dCache_1:37:0.00000000025:253:236:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS07930
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength566 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS07930Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length566 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage470 / 566 aa (83.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa566 aa
Domain-by-domain annotation4 items
2 HAMP#2
272-335 aa · 64 aa · 11.3% of protein
Raw token
HAMP:272:0.000000314:335:64:693 His_kinase#3
359-438 aa · 80 aa · 14.1% of protein
Raw token
His_kinase:359:2.64e-22:438:81:804 HATPase_c#4
454-562 aa · 109 aa · 19.3% of protein
Raw token
HATPase_c:454:0.000000000000223:562:112:109- Raw architecture: dCache_1:37:0.00000000025:253:236:195#HAMP:272:0.000000314:335:64:69#His_kinase:359:2.64e-22:438:81:80#HATPase_c:454:0.000000000000223:562:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000004.1::G00104
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span141118-143570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_07935RefSeq proteinWP_054350701.1
Context group ID
GCF_003478165::NZ_QUER01000004.1::G00104Context members
DXA40_RS07925DXA40_RS07930
Partner locus tags
DXA40_RS07925DXA40_RS07930
Partner old locus tags
DXA40_07930DXA40_07935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054350701.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F6T1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F6T1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS07930Primary locus identifier stored in the genes table.
Old locus tagDXA40_07935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000004.1Sequence record reported by the local genomic context database.
Genomic interval141 870-143 570 nt1 701 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span141 118-143 570 ntGCF_003478165::NZ_QUER01000004.1::G00104
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000004.1::G00104Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000004.1All displayed genes belong to this local TCS context.
Neighborhood span141 118-143 570 nt2 453 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
141 118 nt143 570 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS07925GCF_003478165#DXA40_RS07925
RRunclassified
141 118-141 852 nt · Reverse (-)
DXA40_RS07930GCF_003478165#DXA40_RS07930
HKClassicCurrent focus
141 870-143 570 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS07930The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1230515
Simplified PFAM architecture for HKOC_1230515
PFAM domain coverage: 183 / 566 aa (32.3%)
1 aa566 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[362-436] | HATPase_c[454-561]
- Domain count: 2
- Matched identifier: HKOC_1230515
- Positioned domains: His_kinase 362-436 ; HATPase_c 454-561
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS07930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key