1 HAMP#1
301-379 aa · 79 aa · 13.0% of protein
Raw token
HAMP:301:0.0000000405:379:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS07055
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS07055Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 608 aa (42.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation3 items
2 His_kinase#2
394-473 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:394:6.57e-26:473:80:803 HATPase_c#3
493-594 aa · 102 aa · 16.8% of protein
Raw token
HATPase_c:493:0.000000000000984:594:104:109- Raw architecture: HAMP:301:0.0000000405:379:79:69#His_kinase:394:6.57e-26:473:80:80#HATPase_c:493:0.000000000000984:594:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000003.1::G00093
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span407479-410881Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_07060RefSeq proteinWP_199687236.1
Context group ID
GCF_003478165::NZ_QUER01000003.1::G00093Context members
DXA40_RS07050DXA40_RS07055
Partner locus tags
DXA40_RS07050DXA40_RS07055
Partner old locus tags
DXA40_07055DXA40_07060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199687236.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS07055Primary locus identifier stored in the genes table.
Old locus tagDXA40_07060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000003.1Sequence record reported by the local genomic context database.
Genomic interval409 055-410 881 nt1 827 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span407 479-410 881 ntGCF_003478165::NZ_QUER01000003.1::G00093
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000003.1::G00093Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000003.1All displayed genes belong to this local TCS context.
Neighborhood span407 479-410 881 nt3 403 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
407 479 nt410 881 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS07050GCF_003478165#DXA40_RS07050
RRunclassified
407 479-409 080 nt · Reverse (-)
DXA40_RS07055GCF_003478165#DXA40_RS07055
HKClassicCurrent focus
409 055-410 881 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS07055The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1014563
Simplified PFAM architecture for HKOC_1014563
PFAM domain coverage: 181 / 608 aa (29.8%)
1 aa608 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[395-472] | HATPase_c[493-595]
- Domain count: 2
- Matched identifier: HKOC_1014563
- Positioned domains: His_kinase 395-472 ; HATPase_c 493-595
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS07055
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key