1 His_kinase#1
383-462 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:383:1.37e-24:462:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS06830
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS06830Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 585 aa (27.7%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
479-560 aa · 82 aa · 14.0% of protein
Raw token
HATPase_c:479:0.000000363:560:87:109- Raw architecture: His_kinase:383:1.37e-24:462:80:80#HATPase_c:479:0.000000363:560:87:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000003.1::G00091
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span359218-361737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_06835RefSeq proteinWP_033142129.1
Context group ID
GCF_003478165::NZ_QUER01000003.1::G00091Context members
DXA40_RS06830DXA40_RS06835
Partner locus tags
DXA40_RS06830DXA40_RS06835
Partner old locus tags
DXA40_06835DXA40_06840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_033142129.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS06830Primary locus identifier stored in the genes table.
Old locus tagDXA40_06835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000003.1Sequence record reported by the local genomic context database.
Genomic interval359 218-360 975 nt1 758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span359 218-361 737 ntGCF_003478165::NZ_QUER01000003.1::G00091
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000003.1::G00091Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000003.1All displayed genes belong to this local TCS context.
Neighborhood span359 218-361 737 nt2 520 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
359 218 nt361 737 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS06830GCF_003478165#DXA40_RS06830
HKClassicCurrent focus
359 218-360 975 nt · Forward (+)
DXA40_RS06835GCF_003478165#DXA40_RS06835
RRunclassified
360 985-361 737 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06830The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1137544
Simplified PFAM architecture for HKOC_1137544
PFAM domain coverage: 79 / 585 aa (13.5%)
1 aa585 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[383-461]
- Domain count: 1
- Matched identifier: HKOC_1137544
- Positioned domains: His_kinase 383-461
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key