1 HAMP#1
283-352 aa · 70 aa · 12.2% of protein
Raw token
HAMP:283:0.00000000000000794:352:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS06170
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength575 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS06170Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length575 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 575 aa (41.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa575 aa
Domain-by-domain annotation3 items
2 His_kinase#2
367-440 aa · 74 aa · 12.9% of protein
Raw token
His_kinase:367:2.62e-23:440:74:803 HATPase_c#3
462-556 aa · 95 aa · 16.5% of protein
Raw token
HATPase_c:462:0.0000000453:556:109:109- Raw architecture: HAMP:283:0.00000000000000794:352:70:69#His_kinase:367:2.62e-23:440:74:80#HATPase_c:462:0.0000000453:556:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000003.1::G00086
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span202316-205665Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_06175RefSeq proteinWP_103731517.1
Context group ID
GCF_003478165::NZ_QUER01000003.1::G00086Context members
DXA40_RS06170DXA40_RS06175
Partner locus tags
DXA40_RS06170DXA40_RS06175
Partner old locus tags
DXA40_06175DXA40_06180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731517.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7F873Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7F873_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS06170Primary locus identifier stored in the genes table.
Old locus tagDXA40_06175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000003.1Sequence record reported by the local genomic context database.
Genomic interval202 316-204 043 nt1 728 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 316-205 665 ntGCF_003478165::NZ_QUER01000003.1::G00086
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000003.1::G00086Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000003.1All displayed genes belong to this local TCS context.
Neighborhood span202 316-205 665 nt3 350 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 316 nt205 665 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS06170GCF_003478165#DXA40_RS06170
HKClassicCurrent focus
202 316-204 043 nt · Forward (+)
DXA40_RS06175GCF_003478165#DXA40_RS06175
RRunclassified
204 040-205 665 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS06170The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1189226
Simplified PFAM architecture for HKOC_1189226
PFAM domain coverage: 221 / 575 aa (38.4%)
1 aa575 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[301-352] | His_kinase[368-441] | HATPase_c[462-556]
- Domain count: 3
- Matched identifier: HKOC_1189226
- Positioned domains: HAMP 301-352 ; His_kinase 368-441 ; HATPase_c 462-556
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS06170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key