1 HAMP#1
307-376 aa · 70 aa · 11.7% of protein
Raw token
HAMP:307:0.000000000000237:376:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS05080
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_003478165#DXA40_RS05080Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage253 / 599 aa (42.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation3 items
2 His_kinase#2
391-470 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:391:1.39e-28:470:80:803 HATPase_c#3
490-592 aa · 103 aa · 17.2% of protein
Raw token
HATPase_c:490:0.00000000183:592:110:109- Raw architecture: HAMP:307:0.000000000000237:376:70:69#His_kinase:391:1.39e-28:470:80:80#HATPase_c:490:0.00000000183:592:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_003478165::NZ_QUER01000002.1::G00068
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span545701-552878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_05085RefSeq proteinWP_103731421.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00068Context members
DXA40_RS05075DXA40_RS05080DXA40_RS05085DXA40_RS05090
Partner locus tags
DXA40_RS05075DXA40_RS05080DXA40_RS05085DXA40_RS05090
Partner old locus tags
DXA40_05080DXA40_05085DXA40_05090DXA40_05095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103731421.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FDE8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FDE8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS05080Primary locus identifier stored in the genes table.
Old locus tagDXA40_05085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval547 362-549 161 nt1 800 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span545 701-552 878 ntGCF_003478165::NZ_QUER01000002.1::G00068
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00068Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span545 701-552 878 nt7 178 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
545 701 nt552 878 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
DXA40_RS05075GCF_003478165#DXA40_RS05075
RRunclassified
545 701-547 338 nt · Reverse (-)
DXA40_RS05080GCF_003478165#DXA40_RS05080
HKClassicCurrent focus
547 362-549 161 nt · Reverse (-)
DXA40_RS05085GCF_003478165#DXA40_RS05085
RRunclassified
549 394-551 007 nt · Reverse (-)
DXA40_RS05090GCF_003478165#DXA40_RS05090
HKClassic
551 037-552 878 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS05080The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058375
Simplified PFAM architecture for HKOC_1058375
PFAM domain coverage: 234 / 599 aa (39.1%)
1 aa599 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[325-375] | His_kinase[391-469] | HATPase_c[490-593]
- Domain count: 3
- Matched identifier: HKOC_1058375
- Positioned domains: HAMP 325-375 ; His_kinase 391-469 ; HATPase_c 490-593
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS05080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key