1 HisKA#1
231-292 aa · 62 aa · 13.7% of protein
Raw token
HisKA:231:0.000000000000211:292:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS04840
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength451 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS04840Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length451 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 451 aa (38.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa451 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
341-451 aa · 111 aa · 24.6% of protein
Raw token
HATPase_c:341:6.15e-24:451:111:109- Raw architecture: HisKA:231:0.000000000000211:292:62:64#HATPase_c:341:6.15e-24:451:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000002.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span491730-493735Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_04845RefSeq proteinWP_158587237.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00063Context members
DXA40_RS04840DXA40_RS04845
Partner locus tags
DXA40_RS04840DXA40_RS04845
Partner old locus tags
DXA40_04845DXA40_04850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158587237.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FD83Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FD83_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS04840Primary locus identifier stored in the genes table.
Old locus tagDXA40_04845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval491 730-493 085 nt1 356 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span491 730-493 735 ntGCF_003478165::NZ_QUER01000002.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span491 730-493 735 nt2 006 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
491 730 nt493 735 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS04840GCF_003478165#DXA40_RS04840
HKClassicCurrent focus
491 730-493 085 nt · Reverse (-)
DXA40_RS04845GCF_003478165#DXA40_RS04845
RROmpR
493 064-493 735 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS04840The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1952552
Simplified PFAM architecture for HKOC_1952552
PFAM domain coverage: 172 / 451 aa (38.1%)
1 aa451 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-293] | HATPase_c[342-451]
- Domain count: 2
- Matched identifier: HKOC_1952552
- Positioned domains: HisKA 232-293 ; HATPase_c 342-451
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS04840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key