1 His_kinase#1
372-450 aa · 79 aa · 13.4% of protein
Raw token
His_kinase:372:5.34e-24:450:79:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS04255
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength588 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS04255Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length588 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 588 aa (32.0%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa588 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
469-577 aa · 109 aa · 18.5% of protein
Raw token
HATPase_c:469:0.00000201:577:112:109- Raw architecture: His_kinase:372:5.34e-24:450:79:80#HATPase_c:469:0.00000201:577:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000002.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span360162-363510Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_04260RefSeq proteinWP_103732695.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00059Context members
DXA40_RS04255DXA40_RS04260
Partner locus tags
DXA40_RS04255DXA40_RS04260
Partner old locus tags
DXA40_04260DXA40_04265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732695.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FDX8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FDX8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS04255Primary locus identifier stored in the genes table.
Old locus tagDXA40_04260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval360 162-361 928 nt1 767 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span360 162-363 510 ntGCF_003478165::NZ_QUER01000002.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span360 162-363 510 nt3 349 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
360 162 nt363 510 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS04255GCF_003478165#DXA40_RS04255
HKClassicCurrent focus
360 162-361 928 nt · Forward (+)
DXA40_RS04260GCF_003478165#DXA40_RS04260
RRunclassified
361 909-363 510 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS04255The current gene is the representative for this cluster.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1121388
Simplified PFAM architecture for HKOC_1121388
PFAM domain coverage: 79 / 588 aa (13.4%)
1 aa588 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[372-450]
- Domain count: 1
- Matched identifier: HKOC_1121388
- Positioned domains: His_kinase 372-450
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS04255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key