1 HAMP#1
276-345 aa · 70 aa · 12.4% of protein
Raw token
HAMP:276:0.0000000000765:345:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS04175
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength564 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS04175Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length564 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 564 aa (45.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa564 aa
Domain-by-domain annotation3 items
2 His_kinase#2
360-438 aa · 79 aa · 14.0% of protein
Raw token
His_kinase:360:3.27e-18:438:79:803 HATPase_c#3
457-563 aa · 107 aa · 19.0% of protein
Raw token
HATPase_c:457:0.00000000246:563:111:109- Raw architecture: HAMP:276:0.0000000000765:345:70:69#His_kinase:360:3.27e-18:438:79:80#HATPase_c:457:0.00000000246:563:111:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000002.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span338737-341956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_04180RefSeq proteinWP_158587234.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00057Context members
DXA40_RS04175DXA40_RS04180
Partner locus tags
DXA40_RS04175DXA40_RS04180
Partner old locus tags
DXA40_04180DXA40_04185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_158587234.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FDW8Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FDW8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS04175Primary locus identifier stored in the genes table.
Old locus tagDXA40_04180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval338 737-340 431 nt1 695 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span338 737-341 956 ntGCF_003478165::NZ_QUER01000002.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span338 737-341 956 nt3 220 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
338 737 nt341 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS04175GCF_003478165#DXA40_RS04175
HKClassicCurrent focus
338 737-340 431 nt · Reverse (-)
DXA40_RS04180GCF_003478165#DXA40_RS04180
RRunclassified
340 463-341 956 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS04175The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1240945
Simplified PFAM architecture for HKOC_1240945
PFAM domain coverage: 233 / 564 aa (41.3%)
1 aa564 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[294-344] | His_kinase[361-437] | HATPase_c[457-561]
- Domain count: 3
- Matched identifier: HKOC_1240945
- Positioned domains: HAMP 294-344 ; His_kinase 361-437 ; HATPase_c 457-561
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS04175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key