1 Response_reg#1
3-113 aa · 111 aa · 51.4% of protein
Raw token
Response_reg:3:6.45e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS04060
Response regulator OmpR family
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeOmpRLength216 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS04060Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 216 aa (84.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
140-211 aa · 72 aa · 33.3% of protein
Raw token
Trans_reg_C:140:1.17e-30:211:77:77- Raw architecture: Response_reg:3:6.45e-36:113:111:111#Trans_reg_C:140:1.17e-30:211:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000002.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span305719-307741Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_04065RefSeq proteinWP_103733064.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00056Context members
DXA40_RS04055DXA40_RS04060
Partner locus tags
DXA40_RS04055DXA40_RS04060
Partner old locus tags
DXA40_04060DXA40_04065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103733064.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DI70Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DI70_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS04060Primary locus identifier stored in the genes table.
Old locus tagDXA40_04065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval307 091-307 741 nt651 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span305 719-307 741 ntGCF_003478165::NZ_QUER01000002.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span305 719-307 741 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 719 nt307 741 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS04055GCF_003478165#DXA40_RS04055
HKClassic
305 719-307 098 nt · Reverse (-)
DXA40_RS04060GCF_003478165#DXA40_RS04060
RROmpRCurrent focus
307 091-307 741 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS04060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1885343
Simplified PFAM architecture for RROC_1885343
PFAM domain coverage: 181 / 216 aa (83.8%)
1 aa216 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[141-211]
- Domain count: 2
- Matched identifier: RROC_1885343
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 141-211 ; Trans_reg_C 141-211
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key