1 HAMP#1
180-246 aa · 67 aa · 14.0% of protein
Raw token
HAMP:180:0.000000000589:246:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS03885
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength477 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS03885Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length477 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 477 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa477 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-316 aa · 66 aa · 13.8% of protein
Raw token
HisKA:251:0.0000000000154:316:66:643 HATPase_c#3
364-474 aa · 111 aa · 23.3% of protein
Raw token
HATPase_c:364:3.42e-30:474:111:109- Raw architecture: HAMP:180:0.000000000589:246:67:69#HisKA:251:0.0000000000154:316:66:64#HATPase_c:364:3.42e-30:474:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000002.1::G00054
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span273853-275997Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_03890RefSeq proteinWP_054352300.1
Context group ID
GCF_003478165::NZ_QUER01000002.1::G00054Context members
DXA40_RS03885DXA40_RS03890
Partner locus tags
DXA40_RS03885DXA40_RS03890
Partner old locus tags
DXA40_03890DXA40_03895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054352300.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FFY0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FFY0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS03885Primary locus identifier stored in the genes table.
Old locus tagDXA40_03890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000002.1Sequence record reported by the local genomic context database.
Genomic interval273 853-275 286 nt1 434 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span273 853-275 997 ntGCF_003478165::NZ_QUER01000002.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000002.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000002.1All displayed genes belong to this local TCS context.
Neighborhood span273 853-275 997 nt2 145 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
273 853 nt275 997 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS03885GCF_003478165#DXA40_RS03885
HKClassicCurrent focus
273 853-275 286 nt · Reverse (-)
DXA40_RS03890GCF_003478165#DXA40_RS03890
RROmpR
275 308-275 997 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS03885The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1647671
Simplified PFAM architecture for HKOC_1647671
PFAM domain coverage: 177 / 477 aa (37.1%)
1 aa477 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[251-316] | HATPase_c[364-474]
- Domain count: 2
- Matched identifier: HKOC_1647671
- Positioned domains: HisKA 251-316 ; HATPase_c 364-474
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS03885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key