1 Response_reg#1
3-114 aa · 112 aa · 22.2% of protein
Raw token
Response_reg:3:1.37e-27:114:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS01890
Response regulator, unclassified
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS01890Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 505 aa (37.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
410-451 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:410:0.00000152:451:42:423 HTH_AraC#3
463-499 aa · 37 aa · 7.3% of protein
Raw token
HTH_AraC:463:0.000000012:499:37:42- Raw architecture: Response_reg:3:1.37e-27:114:112:111#HTH_AraC:410:0.00000152:451:42:42#HTH_AraC:463:0.000000012:499:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span424104-427437Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_01890RefSeq proteinWP_033143892.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00014Context members
DXA40_RS01890DXA40_RS01895
Partner locus tags
DXA40_RS01890DXA40_RS01895
Partner old locus tags
DXA40_01890DXA40_01895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033143892.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DVM7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DVM7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS01890Primary locus identifier stored in the genes table.
Old locus tagDXA40_01890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval424 104-425 621 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span424 104-427 437 ntGCF_003478165::NZ_QUER01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span424 104-427 437 nt3 334 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
424 104 nt427 437 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS01890GCF_003478165#DXA40_RS01890
RRunclassifiedCurrent focus
424 104-425 621 nt · Reverse (-)
DXA40_RS01895GCF_003478165#DXA40_RS01895
HKClassic
425 632-427 437 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01890The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152596
Simplified PFAM architecture for RROC_0152596
PFAM domain coverage: 188 / 505 aa (37.2%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-114] | HTH_18[426-501]
- Domain count: 2
- Matched identifier: RROC_0152596
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; HTH_18 426-501 ; HTH_18 426-501
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key