1 Response_reg#1
4-112 aa · 109 aa · 46.6% of protein
Raw token
Response_reg:4:1.14e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS01440
Response regulator OmpR family
Blautia sp. OF01-4LB · GCF_003478165
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS01440Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 234 aa (79.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:154:8.33e-35:230:77:77- Raw architecture: Response_reg:4:1.14e-32:112:110:111#Trans_reg_C:154:8.33e-35:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span330876-332518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_01440RefSeq proteinWP_103732828.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00008Context members
DXA40_RS01435DXA40_RS01440
Partner locus tags
DXA40_RS01435DXA40_RS01440
Partner old locus tags
DXA40_01435DXA40_01440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732828.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DKB1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DKB1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS01440Primary locus identifier stored in the genes table.
Old locus tagDXA40_01440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval331 814-332 518 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span330 876-332 518 ntGCF_003478165::NZ_QUER01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span330 876-332 518 nt1 643 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
330 876 nt332 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS01435GCF_003478165#DXA40_RS01435
HKClassic
330 876-331 817 nt · Reverse (-)
DXA40_RS01440GCF_003478165#DXA40_RS01440
RROmpRCurrent focus
331 814-332 518 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055603
Simplified PFAM architecture for RROC_1055603
PFAM domain coverage: 185 / 234 aa (79.1%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1055603
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key