1 dCache_1#1
109-251 aa · 143 aa · 23.4% of protein
Raw token
dCache_1:109:0.0000353:251:144:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXA40_RS01105
Histidine kinase, Classic
Blautia sp. OF01-4LB · GCF_003478165
ClassHKTypeClassicLength612 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003478165#DXA40_RS01105Stable P2CS identifier used across views.
GenomeGCF_003478165Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length612 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage406 / 612 aa (66.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa612 aa
Domain-by-domain annotation4 items
2 HAMP#2
297-365 aa · 69 aa · 11.3% of protein
Raw token
HAMP:297:0.0000000000103:365:69:693 His_kinase#3
387-466 aa · 80 aa · 13.1% of protein
Raw token
His_kinase:387:5.42e-24:466:80:804 HATPase_c#4
483-596 aa · 114 aa · 18.6% of protein
Raw token
HATPase_c:483:0.000000000000668:596:114:109- Raw architecture: dCache_1:109:0.0000353:251:144:195#HAMP:297:0.0000000000103:365:69:69#His_kinase:387:5.42e-24:466:80:80#HATPase_c:483:0.000000000000668:596:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003478165::NZ_QUER01000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span259876-262448Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXA40_01105RefSeq proteinWP_103732562.1
Context group ID
GCF_003478165::NZ_QUER01000001.1::G00007Context members
DXA40_RS01100DXA40_RS01105
Partner locus tags
DXA40_RS01100DXA40_RS01105
Partner old locus tags
DXA40_01100DXA40_01105
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103732562.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1DIH6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1DIH6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXA40_RS01105Primary locus identifier stored in the genes table.
Old locus tagDXA40_01105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUER01000001.1Sequence record reported by the local genomic context database.
Genomic interval260 610-262 448 nt1 839 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span259 876-262 448 ntGCF_003478165::NZ_QUER01000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003478165::NZ_QUER01000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUER01000001.1All displayed genes belong to this local TCS context.
Neighborhood span259 876-262 448 nt2 573 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
259 876 nt262 448 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXA40_RS01100GCF_003478165#DXA40_RS01100
RRunclassified
259 876-260 613 nt · Reverse (-)
DXA40_RS01105GCF_003478165#DXA40_RS01105
HKClassicCurrent focus
260 610-262 448 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS01105The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0998074
Simplified PFAM architecture for HKOC_0998074
PFAM domain coverage: 242 / 612 aa (39.5%)
1 aa612 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-365] | His_kinase[387-464] | HATPase_c[485-595]
- Domain count: 3
- Matched identifier: HKOC_0998074
- Positioned domains: HAMP 313-365 ; His_kinase 387-464 ; HATPase_c 485-595
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS01105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 286 · GCF_003478165
AssemblyASM347816v1 · Scaffoldhaploid
Genome composition6 349 015 bp · 46,5% GCBlautia sp. OF01-4LB
Signal transduction countsGenes 264 · HK 135 · RR 125CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key