1 HisKA#1
242-307 aa · 66 aa · 14.2% of protein
Raw token
HisKA:242:3.87e-18:307:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ45_RS08965
Histidine kinase, Classic
Clostridium sp. AF32-7AC · GCF_003477925
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477925#DWZ45_RS08965Stable P2CS identifier used across views.
GenomeGCF_003477925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 466 aa (38.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
352-464 aa · 113 aa · 24.2% of protein
Raw token
HATPase_c:352:1.13e-34:464:113:109- Raw architecture: HisKA:242:3.87e-18:307:66:64#HATPase_c:352:1.13e-34:464:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477925::NZ_QUEG01000005.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85467-87603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ45_08965RefSeq proteinWP_118468673.1
Context group ID
GCF_003477925::NZ_QUEG01000005.1::G00019Context members
DWZ45_RS08965DWZ45_RS08970
Partner locus tags
DWZ45_RS08965DWZ45_RS08970
Partner old locus tags
DWZ45_08965DWZ45_08970
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118468673.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ45_RS08965Primary locus identifier stored in the genes table.
Old locus tagDWZ45_08965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUEG01000005.1Sequence record reported by the local genomic context database.
Genomic interval85 467-86 867 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span85 467-87 603 ntGCF_003477925::NZ_QUEG01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477925::NZ_QUEG01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUEG01000005.1All displayed genes belong to this local TCS context.
Neighborhood span85 467-87 603 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 467 nt87 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ45_RS08965GCF_003477925#DWZ45_RS08965
HKClassicCurrent focus
85 467-86 867 nt · Reverse (-)
DWZ45_RS08970GCF_003477925#DWZ45_RS08970
RROmpR
86 875-87 603 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477925#DWZ45_RS08965The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1764648
Simplified PFAM architecture for HKOC_1764648
PFAM domain coverage: 176 / 466 aa (37.8%)
1 aa466 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[242-307] | HATPase_c[353-462]
- Domain count: 2
- Matched identifier: HKOC_1764648
- Positioned domains: HisKA 242-307 ; HATPase_c 353-462
Cluster members and taxonomy
Representative gene: GCF_003477925#DWZ45_RS08965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 010 · GCF_003477925
AssemblyASM347792v1 · Scaffoldhaploid
Genome composition3 107 690 bp · 48,0% GCClostridium sp. AF32-7AC
Signal transduction countsGenes 53 · HK 27 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key