1 Response_reg#1
6-119 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:6:1.28e-31:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ45_RS02140
Response regulator, unclassified
Clostridium sp. AF32-7AC · GCF_003477925
ClassRRTypeunclassifiedLength542 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477925#DWZ45_RS02140Stable P2CS identifier used across views.
GenomeGCF_003477925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length542 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 542 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa542 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
443-485 aa · 43 aa · 7.9% of protein
Raw token
HTH_AraC:443:0.000000000772:485:43:423 HTH_AraC#3
506-535 aa · 30 aa · 5.5% of protein
Raw token
HTH_AraC:506:0.000000571:535:30:42- Raw architecture: Response_reg:6:1.28e-31:119:114:111#HTH_AraC:443:0.000000000772:485:43:42#HTH_AraC:506:0.000000571:535:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477925::NZ_QUEG01000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span456474-459901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ45_02135RefSeq proteinWP_118467384.1
Context group ID
GCF_003477925::NZ_QUEG01000001.1::G00008Context members
DWZ45_RS02140DWZ45_RS02145
Partner locus tags
DWZ45_RS02140DWZ45_RS02145
Partner old locus tags
DWZ45_02135DWZ45_02140
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118467384.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ45_RS02140Primary locus identifier stored in the genes table.
Old locus tagDWZ45_02135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUEG01000001.1Sequence record reported by the local genomic context database.
Genomic interval456 474-458 102 nt1 629 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span456 474-459 901 ntGCF_003477925::NZ_QUEG01000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477925::NZ_QUEG01000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUEG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span456 474-459 901 nt3 428 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
456 474 nt459 901 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ45_RS02140GCF_003477925#DWZ45_RS02140
RRunclassifiedCurrent focus
456 474-458 102 nt · Forward (+)
DWZ45_RS02145GCF_003477925#DWZ45_RS02145
HKClassic
458 102-459 901 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477925#DWZ45_RS02140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0086020
Simplified PFAM architecture for RROC_0086020
PFAM domain coverage: 325 / 542 aa (60.0%)
1 aa542 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-118] | GGDEF_2[164-296] | HTH_18[457-535]
- Domain count: 3
- Matched identifier: RROC_0086020
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GGDEF_2 164-296 ; GGDEF_2 164-296 ; HTH_18 457-535 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_003477925#DWZ45_RS02140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 010 · GCF_003477925
AssemblyASM347792v1 · Scaffoldhaploid
Genome composition3 107 690 bp · 48,0% GCClostridium sp. AF32-7AC
Signal transduction countsGenes 53 · HK 27 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key