1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:8.57e-27:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ45_RS00980
Response regulator OmpR family
Clostridium sp. AF32-7AC · GCF_003477925
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477925#DWZ45_RS00980Stable P2CS identifier used across views.
GenomeGCF_003477925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 228 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:148:6.06e-20:223:77:77- Raw architecture: Response_reg:3:8.57e-27:115:113:111#Trans_reg_C:148:6.06e-20:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477925::NZ_QUEG01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span180049-182021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ45_00975RefSeq proteinWP_182426602.1
Context group ID
GCF_003477925::NZ_QUEG01000001.1::G00001Context members
DWZ45_RS00980DWZ45_RS00985
Partner locus tags
DWZ45_RS00980DWZ45_RS00985
Partner old locus tags
DWZ45_00975DWZ45_00980
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_182426602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ45_RS00980Primary locus identifier stored in the genes table.
Old locus tagDWZ45_00975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUEG01000001.1Sequence record reported by the local genomic context database.
Genomic interval180 049-180 735 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span180 049-182 021 ntGCF_003477925::NZ_QUEG01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477925::NZ_QUEG01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUEG01000001.1All displayed genes belong to this local TCS context.
Neighborhood span180 049-182 021 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
180 049 nt182 021 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ45_RS00980GCF_003477925#DWZ45_RS00980
RROmpRCurrent focus
180 049-180 735 nt · Forward (+)
DWZ45_RS00985GCF_003477925#DWZ45_RS00985
HKClassic
180 729-182 021 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477925#DWZ45_RS00980The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314992
Simplified PFAM architecture for RROC_1314992
PFAM domain coverage: 189 / 228 aa (82.9%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1314992
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_003477925#DWZ45_RS00980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 010 · GCF_003477925
AssemblyASM347792v1 · Scaffoldhaploid
Genome composition3 107 690 bp · 48,0% GCClostridium sp. AF32-7AC
Signal transduction countsGenes 53 · HK 27 · RR 24CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key