1 GAF#1
35-175 aa · 141 aa · 22.7% of protein
Raw token
GAF:35:0.00000000126:175:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS09635
Histidine kinase, Classic
Blautia sp. AF34-10 · GCF_003477865
ClassHKTypeClassicLength621 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS09635Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_c
Protein length621 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage326 / 621 aa (52.5%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa621 aa
Domain-by-domain annotation3 items
2 HisKA#2
343-409 aa · 67 aa · 10.8% of protein
Raw token
HisKA:343:6.81e-16:409:67:643 HATPase_c#3
458-575 aa · 118 aa · 19.0% of protein
Raw token
HATPase_c:458:1.31e-27:575:118:109- Raw architecture: GAF:35:0.00000000126:175:141:133#HisKA:343:6.81e-16:409:67:64#HATPase_c:458:1.31e-27:575:118:109
- Domain description: 1 GAF,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000013.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44991-47164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_09645RefSeq proteinWP_119221579.1
Context group ID
GCF_003477865::NZ_QUED01000013.1::G00007Context members
DWZ60_RS09635DWZ60_RS09640
Partner locus tags
DWZ60_RS09635DWZ60_RS09640
Partner old locus tags
DWZ60_09645DWZ60_09650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119221579.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS09635Primary locus identifier stored in the genes table.
Old locus tagDWZ60_09645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000013.1Sequence record reported by the local genomic context database.
Genomic interval44 991-46 856 nt1 866 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 991-47 164 ntGCF_003477865::NZ_QUED01000013.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000013.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000013.1All displayed genes belong to this local TCS context.
Neighborhood span44 991-47 164 nt2 174 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 991 nt47 164 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS09635GCF_003477865#DWZ60_RS09635
HKClassicCurrent focus
44 991-46 856 nt · Forward (+)
DWZ60_RS09640GCF_003477865#DWZ60_RS09640
RRCheY
46 859-47 164 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS09635The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0970625
Simplified PFAM architecture for HKOC_0970625
PFAM domain coverage: 319 / 621 aa (51.4%)
1 aa621 aa
GAFHisKAHATPase_c
- Simplified architecture: GAF + HisKA + HATPase_c
- Raw architecture: GAF[35-171] | HisKA[344-409] | HATPase_c[459-574]
- Domain count: 3
- Matched identifier: HKOC_0970625
- Positioned domains: GAF 35-171 ; HisKA 344-409 ; HATPase_c 459-574
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS09635
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key