1 Response_reg#1
3-105 aa · 103 aa · 19.6% of protein
Raw token
Response_reg:3:9.8e-24:105:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS08785
Response regulator, unclassified
Blautia sp. AF34-10 · GCF_003477865
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS08785Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 525 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-471 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:431:0.00000000186:471:41:423 HTH_AraC#3
486-522 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:486:0.0000000868:522:37:42- Raw architecture: Response_reg:3:9.8e-24:105:103:111#HTH_AraC:431:0.00000000186:471:41:42#HTH_AraC:486:0.0000000868:522:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span106534-109839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_08800RefSeq proteinWP_119188743.1
Context group ID
GCF_003477865::NZ_QUED01000011.1::G00005Context members
DWZ60_RS08780DWZ60_RS08785
Partner locus tags
DWZ60_RS08780DWZ60_RS08785
Partner old locus tags
DWZ60_08795DWZ60_08800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119188743.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F470Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F470_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS08785Primary locus identifier stored in the genes table.
Old locus tagDWZ60_08800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000011.1Sequence record reported by the local genomic context database.
Genomic interval108 262-109 839 nt1 578 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span106 534-109 839 ntGCF_003477865::NZ_QUED01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000011.1All displayed genes belong to this local TCS context.
Neighborhood span106 534-109 839 nt3 306 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 534 nt109 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS08780GCF_003477865#DWZ60_RS08780
HKClassic
106 534-108 243 nt · Forward (+)
DWZ60_RS08785GCF_003477865#DWZ60_RS08785
RRunclassifiedCurrent focus
108 262-109 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS08785The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119325
Simplified PFAM architecture for RROC_0119325
PFAM domain coverage: 186 / 525 aa (35.4%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-109] | HTH_18[444-522]
- Domain count: 2
- Matched identifier: RROC_0119325
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; HTH_18 444-522 ; HTH_18 444-522
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS08785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key