1 HAMP#1
258-328 aa · 71 aa · 12.5% of protein
Raw token
HAMP:258:0.000000498:328:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS08780
Histidine kinase, Classic
Blautia sp. AF34-10 · GCF_003477865
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS08780Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 569 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 His_kinase#2
343-416 aa · 74 aa · 13.0% of protein
Raw token
His_kinase:343:1.32e-19:416:74:803 HATPase_c#3
445-524 aa · 80 aa · 14.1% of protein
Raw token
HATPase_c:445:0.000000524:524:84:109- Raw architecture: HAMP:258:0.000000498:328:71:69#His_kinase:343:1.32e-19:416:74:80#HATPase_c:445:0.000000524:524:84:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span106534-109839Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_08795RefSeq proteinWP_119221533.1
Context group ID
GCF_003477865::NZ_QUED01000011.1::G00005Context members
DWZ60_RS08780DWZ60_RS08785
Partner locus tags
DWZ60_RS08780DWZ60_RS08785
Partner old locus tags
DWZ60_08795DWZ60_08800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119221533.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS08780Primary locus identifier stored in the genes table.
Old locus tagDWZ60_08795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000011.1Sequence record reported by the local genomic context database.
Genomic interval106 534-108 243 nt1 710 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span106 534-109 839 ntGCF_003477865::NZ_QUED01000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000011.1All displayed genes belong to this local TCS context.
Neighborhood span106 534-109 839 nt3 306 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
106 534 nt109 839 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS08780GCF_003477865#DWZ60_RS08780
HKClassicCurrent focus
106 534-108 243 nt · Forward (+)
DWZ60_RS08785GCF_003477865#DWZ60_RS08785
RRunclassified
108 262-109 839 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003479185#DWX00_RS10685Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1111251
Simplified PFAM architecture for HKOC_1111251
PFAM domain coverage: 177 / 590 aa (30.0%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[365-441] | HATPase_c[462-561]
- Domain count: 2
- Matched identifier: HKOC_1111251
- Positioned domains: His_kinase 365-441 ; HATPase_c 462-561
Cluster members and taxonomy
Representative gene: GCF_003479185#DWX00_RS10685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key