1 HAMP#1
271-346 aa · 76 aa · 13.3% of protein
Raw token
HAMP:271:0.0000000000123:346:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS04540
Histidine kinase, Classic
Blautia sp. AF34-10 · GCF_003477865
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS04540Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage260 / 571 aa (45.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation3 items
2 His_kinase#2
361-439 aa · 79 aa · 13.8% of protein
Raw token
His_kinase:361:3.89e-23:439:80:803 HATPase_c#3
458-562 aa · 105 aa · 18.4% of protein
Raw token
HATPase_c:458:0.000000112:562:107:109- Raw architecture: HAMP:271:0.0000000000123:346:76:69#His_kinase:361:3.89e-23:439:80:80#HATPase_c:458:0.000000112:562:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81620-83904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_04560RefSeq proteinWP_055266927.1
Context group ID
GCF_003477865::NZ_QUED01000005.1::G00046Context members
DWZ60_RS04535DWZ60_RS04540
Partner locus tags
DWZ60_RS04535DWZ60_RS04540
Partner old locus tags
DWZ60_04555DWZ60_04560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055266927.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NED7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NED7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS04540Primary locus identifier stored in the genes table.
Old locus tagDWZ60_04560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000005.1Sequence record reported by the local genomic context database.
Genomic interval82 189-83 904 nt1 716 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 620-83 904 ntGCF_003477865::NZ_QUED01000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000005.1All displayed genes belong to this local TCS context.
Neighborhood span81 620-83 904 nt2 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 620 nt83 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS04535GCF_003477865#DWZ60_RS04535
RRunclassified
81 620-82 153 nt · Reverse (-)
DWZ60_RS04540GCF_003477865#DWZ60_RS04540
HKClassicCurrent focus
82 189-83 904 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS09920Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1207821
Simplified PFAM architecture for HKOC_1207821
PFAM domain coverage: 232 / 571 aa (40.6%)
1 aa571 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[294-344] | His_kinase[364-437] | HATPase_c[457-563]
- Domain count: 3
- Matched identifier: HKOC_1207821
- Positioned domains: HAMP 294-344 ; His_kinase 364-437 ; HATPase_c 457-563
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS09920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key