1 Response_reg#1
4-116 aa · 113 aa · 63.8% of protein
Raw token
Response_reg:4:1.7e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS04535
Response regulator, unclassified
Blautia sp. AF34-10 · GCF_003477865
ClassRRTypeunclassifiedLength177 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS04535Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length177 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage113 / 177 aa (63.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa177 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.7e-28:116:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000005.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81620-83904Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_04555RefSeq proteinWP_158576309.1
Context group ID
GCF_003477865::NZ_QUED01000005.1::G00046Context members
DWZ60_RS04535DWZ60_RS04540
Partner locus tags
DWZ60_RS04535DWZ60_RS04540
Partner old locus tags
DWZ60_04555DWZ60_04560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_158576309.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS04535Primary locus identifier stored in the genes table.
Old locus tagDWZ60_04555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000005.1Sequence record reported by the local genomic context database.
Genomic interval81 620-82 153 nt534 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 620-83 904 ntGCF_003477865::NZ_QUED01000005.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000005.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000005.1All displayed genes belong to this local TCS context.
Neighborhood span81 620-83 904 nt2 285 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 620 nt83 904 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS04535GCF_003477865#DWZ60_RS04535
RRunclassifiedCurrent focus
81 620-82 153 nt · Reverse (-)
DWZ60_RS04540GCF_003477865#DWZ60_RS04540
HKClassic
82 189-83 904 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS04535The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2190800
Simplified PFAM architecture for RROC_2190800
PFAM domain coverage: 112 / 177 aa (63.3%)
1 aa177 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-115]
- Domain count: 1
- Matched identifier: RROC_2190800
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS04535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key