1 HisKA#1
355-419 aa · 65 aa · 11.1% of protein
Raw token
HisKA:355:0.000000000000248:419:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS04425
Histidine kinase, Classic
Blautia sp. AF34-10 · GCF_003477865
ClassHKTypeClassicLength586 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS04425Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length586 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 586 aa (29.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa586 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
465-573 aa · 109 aa · 18.6% of protein
Raw token
HATPase_c:465:0.00000000000165:573:113:109- Raw architecture: HisKA:355:0.000000000000248:419:65:64#HATPase_c:465:0.00000000000165:573:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000005.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52024-54463Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_04445RefSeq proteinWP_118699790.1
Context group ID
GCF_003477865::NZ_QUED01000005.1::G00045Context members
DWZ60_RS04420DWZ60_RS04425
Partner locus tags
DWZ60_RS04420DWZ60_RS04425
Partner old locus tags
DWZ60_04440DWZ60_04445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118699790.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS04425Primary locus identifier stored in the genes table.
Old locus tagDWZ60_04445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000005.1Sequence record reported by the local genomic context database.
Genomic interval52 703-54 463 nt1 761 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 024-54 463 ntGCF_003477865::NZ_QUED01000005.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000005.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000005.1All displayed genes belong to this local TCS context.
Neighborhood span52 024-54 463 nt2 440 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 024 nt54 463 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS04420GCF_003477865#DWZ60_RS04420
RROmpR
52 024-52 737 nt · Forward (+)
DWZ60_RS04425GCF_003477865#DWZ60_RS04425
HKClassicCurrent focus
52 703-54 463 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477865#DWZ60_RS04425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1132420
Simplified PFAM architecture for HKOC_1132420
PFAM domain coverage: 171 / 586 aa (29.2%)
1 aa586 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[356-419] | HATPase_c[465-571]
- Domain count: 2
- Matched identifier: HKOC_1132420
- Positioned domains: HisKA 356-419 ; HATPase_c 465-571
Cluster members and taxonomy
Representative gene: GCF_003477865#DWZ60_RS04425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key