1 HAMP#1
262-331 aa · 70 aa · 12.7% of protein
Raw token
HAMP:262:0.000000000000802:331:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ60_RS02860
Histidine kinase, Classic
Blautia sp. AF34-10 · GCF_003477865
ClassHKTypeClassicLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477865#DWZ60_RS02860Stable P2CS identifier used across views.
GenomeGCF_003477865Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage259 / 550 aa (47.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 His_kinase#2
347-426 aa · 80 aa · 14.5% of protein
Raw token
His_kinase:347:2.79e-21:426:80:803 HATPase_c#3
437-545 aa · 109 aa · 19.8% of protein
Raw token
HATPase_c:437:0.00000000019:545:114:109- Raw architecture: HAMP:262:0.000000000000802:331:70:69#His_kinase:347:2.79e-21:426:80:80#HATPase_c:437:0.00000000019:545:114:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477865::NZ_QUED01000003.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88164-90567Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ60_02880RefSeq proteinWP_117509490.1
Context group ID
GCF_003477865::NZ_QUED01000003.1::G00032Context members
DWZ60_RS02855DWZ60_RS02860
Partner locus tags
DWZ60_RS02855DWZ60_RS02860
Partner old locus tags
DWZ60_02875DWZ60_02880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117509490.1Primary protein accession used for annex mappings.
UniProt accessionA0AAE3F064Primary UniProt accession resolved in the annex database.
UniProt IDA0AAE3F064_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ60_RS02860Primary locus identifier stored in the genes table.
Old locus tagDWZ60_02880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUED01000003.1Sequence record reported by the local genomic context database.
Genomic interval88 915-90 567 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 164-90 567 ntGCF_003477865::NZ_QUED01000003.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477865::NZ_QUED01000003.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUED01000003.1All displayed genes belong to this local TCS context.
Neighborhood span88 164-90 567 nt2 404 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 164 nt90 567 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWZ60_RS02855GCF_003477865#DWZ60_RS02855
RRunclassified
88 164-88 898 nt · Reverse (-)
DWZ60_RS02860GCF_003477865#DWZ60_RS02860
HKClassicCurrent focus
88 915-90 567 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435675#DW642_RS05135Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1293114
Simplified PFAM architecture for HKOC_1293114
PFAM domain coverage: 236 / 550 aa (42.9%)
1 aa550 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[282-331] | His_kinase[348-425] | HATPase_c[438-545]
- Domain count: 3
- Matched identifier: HKOC_1293114
- Positioned domains: HAMP 282-331 ; His_kinase 348-425 ; HATPase_c 438-545
Cluster members and taxonomy
Representative gene: GCF_003435675#DW642_RS05135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 968 · GCF_003477865
AssemblyASM347786v1 · Contighaploid
Genome composition3 555 463 bp · 47,5% GCBlautia sp. AF34-10
Signal transduction countsGenes 87 · HK 42 · RR 42CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key