1 HAMP#1
182-251 aa · 70 aa · 14.3% of protein
Raw token
HAMP:182:7.12e-17:251:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS12395
Histidine kinase, Classic
Clostridium sp. AF50-3 · GCF_003477445
ClassHKTypeClassicLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS12395Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 491 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-329 aa · 65 aa · 13.2% of protein
Raw token
HisKA:265:9.32e-16:329:65:643 HATPase_c#3
376-486 aa · 111 aa · 22.6% of protein
Raw token
HATPase_c:376:1.97e-30:486:111:109- Raw architecture: HAMP:182:7.12e-17:251:70:69#HisKA:265:9.32e-16:329:65:64#HATPase_c:376:1.97e-30:486:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000010.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span134751-136965Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_12390RefSeq proteinWP_118492943.1
Context group ID
GCF_003477445::NZ_QUDH01000010.1::G00005Context members
DW085_RS12390DW085_RS12395
Partner locus tags
DW085_RS12390DW085_RS12395
Partner old locus tags
DW085_12385DW085_12390
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118492943.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS12395Primary locus identifier stored in the genes table.
Old locus tagDW085_12390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000010.1Sequence record reported by the local genomic context database.
Genomic interval135 490-136 965 nt1 476 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span134 751-136 965 ntGCF_003477445::NZ_QUDH01000010.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000010.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000010.1All displayed genes belong to this local TCS context.
Neighborhood span134 751-136 965 nt2 215 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
134 751 nt136 965 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS12390GCF_003477445#DW085_RS12390
RROmpR
134 751-135 440 nt · Reverse (-)
DW085_RS12395GCF_003477445#DW085_RS12395
HKClassicCurrent focus
135 490-136 965 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS12395The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1528565
Simplified PFAM architecture for HKOC_1528565
PFAM domain coverage: 229 / 491 aa (46.6%)
1 aa491 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-251] | HisKA[264-328] | HATPase_c[377-487]
- Domain count: 3
- Matched identifier: HKOC_1528565
- Positioned domains: HAMP 199-251 ; HisKA 264-328 ; HATPase_c 377-487
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS12395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key