1 Response_reg#1
3-115 aa · 113 aa · 40.2% of protein
Raw token
Response_reg:3:2.08e-18:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS05595
Response regulator, unclassified
Clostridium sp. AF50-3 · GCF_003477445
ClassRRTypeunclassifiedLength281 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003477445#DW085_RS05595Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length281 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage233 / 281 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa281 aa
Domain-by-domain annotation2 items
2 YcbB#2
154-273 aa · 120 aa · 42.7% of protein
Raw token
YcbB:154:1.25e-40:273:131:131- Raw architecture: Response_reg:3:2.08e-18:115:113:111#YcbB:154:1.25e-40:273:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003477445::NZ_QUDH01000003.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span275915-276760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_05590RefSeq proteinWP_022359963.1
Context group ID
GCF_003477445::NZ_QUDH01000003.1::G00015Context members
DW085_RS05595
Partner locus tags
DW085_RS05595
Partner old locus tags
DW085_05590
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022359963.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW3X502Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW3X502_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS05595Primary locus identifier stored in the genes table.
Old locus tagDW085_05590Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000003.1Sequence record reported by the local genomic context database.
Genomic interval275 915-276 760 nt846 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span275 915-276 760 ntGCF_003477445::NZ_QUDH01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000003.1All displayed genes belong to this local TCS context.
Neighborhood span275 915-276 760 nt846 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
275 915 nt276 760 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW085_RS05595GCF_003477445#DW085_RS05595
RRunclassifiedCurrent focus
275 915-276 760 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000434655#QVO97_RS08800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0595536
Simplified PFAM architecture for RROC_0595536
PFAM domain coverage: 229 / 281 aa (81.5%)
1 aa281 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[3-114] | YcbB[157-273]
- Domain count: 2
- Matched identifier: RROC_0595536
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; YcbB 157-273 ; YcbB 157-273
Cluster members and taxonomy
Representative gene: GCF_000434655#QVO97_RS08800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key