1 Response_reg#1
4-113 aa · 110 aa · 48.9% of protein
Raw token
Response_reg:4:9.1e-32:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW085_RS01440
Response regulator OmpR family
Clostridium sp. AF50-3 · GCF_003477445
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003477445#DW085_RS01440Stable P2CS identifier used across views.
GenomeGCF_003477445Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 225 aa (81.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:146:3.5e-24:219:76:77- Raw architecture: Response_reg:4:9.1e-32:113:110:111#Trans_reg_C:146:3.5e-24:219:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003477445::NZ_QUDH01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span319087-320828Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW085_01440RefSeq proteinWP_118490835.1
Context group ID
GCF_003477445::NZ_QUDH01000001.1::G00002Context members
DW085_RS01435DW085_RS01440
Partner locus tags
DW085_RS01435DW085_RS01440
Partner old locus tags
DW085_01435DW085_01440
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118490835.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW085_RS01440Primary locus identifier stored in the genes table.
Old locus tagDW085_01440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDH01000001.1Sequence record reported by the local genomic context database.
Genomic interval320 151-320 828 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span319 087-320 828 ntGCF_003477445::NZ_QUDH01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003477445::NZ_QUDH01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span319 087-320 828 nt1 742 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
319 087 nt320 828 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW085_RS01435GCF_003477445#DW085_RS01435
HKClassic
319 087-320 154 nt · Reverse (-)
DW085_RS01440GCF_003477445#DW085_RS01440
RROmpRCurrent focus
320 151-320 828 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003477445#DW085_RS01440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1479991
Simplified PFAM architecture for RROC_1479991
PFAM domain coverage: 183 / 225 aa (81.3%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1479991
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 146-219 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_003477445#DW085_RS01440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 293 021 · GCF_003477445
AssemblyASM347744v1 · Scaffoldhaploid
Genome composition3 864 962 bp · 48,0% GCClostridium sp. AF50-3
Signal transduction countsGenes 53 · HK 28 · RR 22CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key