1 Response_reg#1
4-89 aa · 86 aa · 36.8% of protein
Raw token
Response_reg:4:0.0000000000161:89:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ50_RS08930
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_003475365
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003475365#DWZ50_RS08930Stable P2CS identifier used across views.
GenomeGCF_003475365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 234 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-230 aa · 94 aa · 40.2% of protein
Raw token
LytTR:137:2.88e-17:230:99:98- Raw architecture: Response_reg:4:0.0000000000161:89:86:111#LytTR:137:2.88e-17:230:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003475365::NZ_QRQE01000019.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span21191-21895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ50_08930RefSeq proteinWP_118444610.1
Context group ID
GCF_003475365::NZ_QRQE01000019.1::G00016Context members
DWZ50_RS08930
Partner locus tags
DWZ50_RS08930
Partner old locus tags
DWZ50_08930
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118444610.1Primary protein accession used for annex mappings.
UniProt accessionA0A415S9R5Primary UniProt accession resolved in the annex database.
UniProt IDA0A415S9R5_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ50_RS08930Primary locus identifier stored in the genes table.
Old locus tagDWZ50_08930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRQE01000019.1Sequence record reported by the local genomic context database.
Genomic interval21 191-21 895 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 191-21 895 ntGCF_003475365::NZ_QRQE01000019.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475365::NZ_QRQE01000019.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRQE01000019.1All displayed genes belong to this local TCS context.
Neighborhood span21 191-21 895 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 191 nt21 895 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWZ50_RS08930GCF_003475365#DWZ50_RS08930
RRLytTRCurrent focus
21 191-21 895 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003475365#DWZ50_RS08930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1055591
Simplified PFAM architecture for RROC_1055591
PFAM domain coverage: 204 / 234 aa (87.2%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-115] | LytTR[138-229]
- Domain count: 2
- Matched identifier: RROC_1055591
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; LytTR 138-229 ; LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_003475365#DWZ50_RS08930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_003475365
AssemblyASM347536v1 · Scaffoldhaploid
Genome composition4 195 233 bp · 42,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 108 · HK 48 · RR 56CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key