1 HAMP#1
191-264 aa · 74 aa · 14.6% of protein
Raw token
HAMP:191:0.0000000000000944:264:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS06765
Histidine kinase, Classic
Dorea formicigenerans · GCF_003475215
ClassHKTypeClassicLength507 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003475215#DWZ98_RS06765Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 507 aa (50.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 His_kinase#2
279-358 aa · 80 aa · 15.8% of protein
Raw token
His_kinase:279:1.37e-31:358:80:803 HATPase_c#3
378-480 aa · 103 aa · 20.3% of protein
Raw token
HATPase_c:378:1.44e-16:480:107:109- Raw architecture: HAMP:191:0.0000000000000944:264:74:69#His_kinase:279:1.37e-31:358:80:80#HATPase_c:378:1.44e-16:480:107:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003475215::NZ_QRPD01000004.1::G00048
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span184503-188253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_06760RefSeq proteinWP_242994316.1
Context group ID
GCF_003475215::NZ_QRPD01000004.1::G00048Context members
DWZ98_RS06755DWZ98_RS06760DWZ98_RS06765
Partner locus tags
DWZ98_RS06755DWZ98_RS06760DWZ98_RS06765
Partner old locus tags
DWZ98_06750DWZ98_06755DWZ98_06760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242994316.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS06765Primary locus identifier stored in the genes table.
Old locus tagDWZ98_06760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000004.1Sequence record reported by the local genomic context database.
Genomic interval186 730-188 253 nt1 524 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span184 503-188 253 ntGCF_003475215::NZ_QRPD01000004.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000004.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span184 503-188 253 nt3 751 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 503 nt188 253 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWZ98_RS06755GCF_003475215#DWZ98_RS06755
RROmpR
184 503-185 177 nt · Forward (+)
DWZ98_RS06760GCF_003475215#DWZ98_RS06760
HKClassic
185 311-186 627 nt · Forward (+)
DWZ98_RS06765GCF_003475215#DWZ98_RS06765
HKClassicCurrent focus
186 730-188 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS09295Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1441284
Simplified PFAM architecture for HKOC_1441284
PFAM domain coverage: 230 / 507 aa (45.4%)
1 aa507 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[217-263] | His_kinase[279-356] | HATPase_c[377-481]
- Domain count: 3
- Matched identifier: HKOC_1441284
- Positioned domains: HAMP 217-263 ; His_kinase 279-356 ; HATPase_c 377-481
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS09295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key