1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:1.36e-36:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWZ98_RS06755
Response regulator OmpR family
Dorea formicigenerans · GCF_003475215
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003475215#DWZ98_RS06755Stable P2CS identifier used across views.
GenomeGCF_003475215Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:149:1.25e-33:222:77:77- Raw architecture: Response_reg:2:1.36e-36:114:113:111#Trans_reg_C:149:1.25e-33:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003475215::NZ_QRPD01000004.1::G00048
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span184503-188253Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWZ98_06750RefSeq proteinWP_117657651.1
Context group ID
GCF_003475215::NZ_QRPD01000004.1::G00048Context members
DWZ98_RS06755DWZ98_RS06760DWZ98_RS06765
Partner locus tags
DWZ98_RS06755DWZ98_RS06760DWZ98_RS06765
Partner old locus tags
DWZ98_06750DWZ98_06755DWZ98_06760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117657651.1Primary protein accession used for annex mappings.
UniProt accessionA0A415H6A4Primary UniProt accession resolved in the annex database.
UniProt IDA0A415H6A4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWZ98_RS06755Primary locus identifier stored in the genes table.
Old locus tagDWZ98_06750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QRPD01000004.1Sequence record reported by the local genomic context database.
Genomic interval184 503-185 177 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span184 503-188 253 ntGCF_003475215::NZ_QRPD01000004.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003475215::NZ_QRPD01000004.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QRPD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span184 503-188 253 nt3 751 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 503 nt188 253 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWZ98_RS06755GCF_003475215#DWZ98_RS06755
RROmpRCurrent focus
184 503-185 177 nt · Forward (+)
DWZ98_RS06760GCF_003475215#DWZ98_RS06760
HKClassic
185 311-186 627 nt · Forward (+)
DWZ98_RS06765GCF_003475215#DWZ98_RS06765
HKClassic
186 730-188 253 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437485#DXD18_RS09305Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1543304
Simplified PFAM architecture for RROC_1543304
PFAM domain coverage: 187 / 224 aa (83.5%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-114] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1543304
- Positioned domains: Response_reg 2-114 ; Response_reg 2-114 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_003437485#DXD18_RS09305
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_003475215
AssemblyASM347521v1 · Scaffoldhaploid
Genome composition3 408 767 bp · 41,0% GCDorea formicigenerans
Signal transduction countsGenes 98 · HK 48 · RR 48CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key